Molecular Human Reproduction, Vol. 5, No. 1, 10-13,
January 1999
© 1999 European Society of Human Reproduction and Embryology
Molecular analysis of the cystic fibrosis gene reveals a high frequency of the intron 8 splice variant 5T in Egyptian males with congenital bilateral absence of the vas deferens
1 Center for Medical Genetics and 2 Center for Reproductive Medicine, University Hospital of the Dutch-speaking Brussels Free University, Laarbeeklaan 101, 1090 Brussels, Belgium and 3 Center of Fertility and Andrology Care, Kamal Shaeer Hospital, Orman-Dokki, Egypt
| Abstract |
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It has previously been shown that defects in the cystic fibrosis transmembrane conductance regulator (CFTR) gene are largely responsible for the condition of congenital bilateral absence of the vas deferens (CBAVD), without associated renal abnormalities, in Caucasian populations. To assess the involvement of the CFTR in CBAVD in a population with presumed low cystic fibrosis (CF) frequency, we have analysed 20 CBAVD males from Egypt for the presence of 12 common Caucasian CFTR mutations and the intron 8 5T splice variant, IVS-5T, known to be a major cause of CBAVD in Caucasian patients. In 16 of the males without associated renal abnormalities only one
F508 carrier was identified, but an exceptionally high frequency of the IVS-5T variant was found (14 of 32 alleles or 43.7%), confirming that this variant is involved in many cases of CBAVD, even in populations where CF is rare. CFTR mutations or the IVS-5T variant were found neither in the remaining four patients with associated renal abnormalities nor in the spouses of the 20 CBAVD patients. However, one patient was homozygous for a leucine to proline substitution at amino acid position 541 (L541P) of the CFTR. It is as yet not clear whether this change is involved in CBAVD in this male. congenital bilateral absence of the vas deferens/cystic fibrosis/Egypt/male infertility/obstructive azoospermia
| Introduction |
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Congenital bilateral absence of the vas deferens (CBAVD) is responsible for up to 2% of male infertility and 6% of all obstructive azoospermia cases (Dubin and Amelar, 1971
The mutations found in the CFTR genes of CBAVD males have recently been reviewed (De Braekeleer and Férec, 1996
). Although a substantial fraction of patients are carriers of a mutation also seen in CF (such as the
F508 mutation, the commonest mutation in CF worldwide), some patients carry a second mutation that seems to be specific to the condition of isolated CBAVD. In other patients, a second mutation has not been identified. An intron 8 splice variant, called 5T (IVS85T), is also frequently observed in CBAVD and seems to be specific for this condition, and probably also for other CF-related disease presentations without the major features of CF (Chillon et al., 1995
; Costes et al., 1995
; Jarvi et al., 1995
; Zielenski et al., 1995
; Dumur et al., 1996
; Kerem et al., 1997
). The splice variant is localized at the branch acceptor site of exon 9 and alternative variants consist of 7T or 9T nucleotides. The 5T allele is associated with high levels of exon 9 skipping which results in the production of non-functional CFTR protein (Delaney et al., 1993
; Strong et al., 1993
). The splicing efficiency of the 5T allele shows inter-individual and inter-organ variability, and this variability could explain why the presence of this variant in males will not always lead to CBAVD, i.e. that the 5T allele is a mutation with variable penetrance (Rave-Harel et al., 1997
; Teng et al., 1997
).
We have studied 20 males with CBAVD from Egypt with the aim to determine the incidence of cystic fibrosis mutations and the 5T variant in these patients. Since no data are available on either the frequency of CF or on the mutations leading to CF in Egypt, we have included the most common mutations seen in CF worldwide (The Cystic Fibrosis Genetic Analysis Consortium, 1994; Estivill et al., 1997
). The DNA samples of the spouses of the 20 males were also studied for two reasons. First, they could serve as controls for the presence of CF mutations and the 5T variant. Second, since the patients were coming for fertility treatment by testicular sperm extraction (TESE) or microsurgical epidydymal sperm aspiration (MESA) and intracytoplasmic sperm injection (ICSI) of oocytes, these couples could be at risk for children with CF if the females are also carriers of a CF mutation.
| Materials and methods |
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Patients
Blood samples were collected from 20 males with CBAVD visiting the Kamal Shaeer Hospital Center of Fertility and Andrology Care in Orman-Dokki, Egypt. The diagnosis of CBAVD was based on the following examinations: (i) semen analysis proving low volume (< 0.5 ml), non-coagulability and azoospermia; (ii) absence or low levels of fructose and
-glucosidase in seminal plasma; (iii) absence of palpable vasa deferentia on both sides of the scrotal compartment; (iv) absence of the pelvic part of the vas deferens and the seminal vesicles by transrectal ultrasonography (TRUS); (v) routine plain and intravenous urography to screen for urinary abnormalities; (vi) family history. Blood samples were also drawn from the spouses of these males. Three couples were consanguineous (first cousins). Four CBAVD patients also had renal anomalies (see Results section). In none of the patients could a sweat test be performed.
CFTR mutation analysis
DNA was prepared from EDTA blood according to standard procedures. Initially, eight of the males' samples were analysed by a commercial kit allowing the detection of eight mutations in the CFTR gene:
F508,
I507, G542X, G551D, R553X, 17171G
A, W1282X and N1303K (INNO-LiPA CF, Innogenetics, Zwijnaarde, Belgium). Later on, all samples, including the previous ones, were studied by using the CF(12)m polymerase chain reaction (PCR) kit (Zeneca Diagnostics, Abingdon, UK) allowing the detection of the mutations present in the INNO-LiPA CF kit (with the exception of the
I507 mutation) and the R117H, R1162X, R334W, 621+1G
T and 3849+10 kbC
T mutations.
Sequencing of exon 11 of the CFTR gene was performed directly on a PCR-amplified fragment using the amplification primers 11i5 and 11i3 for sequencing (Sequenase Version 2.0, Amersham, UK) (Zielenski et al., 1991
). Screening for the presence of the L541P change was done by restriction enzyme digestion of the PCR amplified exon 11 (with primers 11i5 and 11i3) with ScrFI. The normal 425 bp PCR product contains one ScrFI site (resulting in fragments of 323 and 102 bp); the T to C substitution introduces an additional site resulting in fragments of 153, 170 and 102 bp. The difference in patterns could easily be detected by 2% agarose gel electrophoresis and ethidium bromide staining.
Amplification and sequencing of the polypyrimidine tract in front of exon 9 was performed using primers CFI3 and CFI6 (Chu et al., 1991
). For some patients, the poly-T tract was identified by using the radioactively labelled CFI3/CFI6 PCR fragment in single-strand conformation polymorphism (SSCP) analysis.
| Results |
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Four of the 20 CBAVD patients had renal anomalies: (i) absent right kidney and an ectopic left kidney; (ii) ectopic pelvic kidney; (iii) absent right kidney and (iv) ectopic malrotated right kidney.
Mutation analysis of the 20 CBAVD males and their spouses revealed one carrier male for the
F508 mutation. This patient has no renal anomalies. None of the other individuals showed a mutation except the male with the ectopic pelvic kidney (patient ii in the previous paragraph) who had neither a normal nor a mutated band at the G542X site when studied by the INNO-LiPA CF kit. In this patient, normal bands were visible at the sites of the other mutations localized in exon 11 (17171G
A, G551D, R553X) thereby excluding a deletion of exon 11. PCR amplification and sequencing of the whole coding region of exon 11 showed that he was homozygous for a T to C substitution at cDNA position 1754 of the CFTR (1754T
C), predicting an amino acid change of leucine to proline at amino acid position 541 (L541P). This base substitution probably inhibits the binding of the exon 11 PCR fragment to the normal (and mutant) sequence at the G542X locations in the INNO-LiPA CF kit. Since this substitution would probably not be detected in heterozygotes with a normal and an L541P allele, another approach, based on the creation of an additional ScrFI restriction site in the PCR fragment defined by primers 11i5 and 11i3, was used to screen for it in the other individuals (Figure 1
). The 1754T
C change was not found in any of the other individuals except in his consanguineous spouse who was a carrier.
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Study of the polypyrimidine tract in front of exon 9 revealed a high frequency of the 5T allele in the CBAVD males without renal anomalies (Table I
F508 mutation is almost exclusively found on a 9T background and this is probably also the case for the carrier male detected in this study since he has 7T and 9T alleles.
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| Discussion |
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Cystic fibrosis is the commonest autosomal recessive disease in Caucasians caused by mutations in the CFTR gene, which result in dysfunction of a cAMP-regulated chloride channel, the CFTR protein. The major clinical manifestations of CF are chronic obstructive lung disease and pancreatic insufficiency. Most males with CF are also infertile due to CBAVD. In recent years, a genetic link between the aetiology of isolated CBAVD and CF has been established by the strong association of CBAVD with CFTR mutations in the majority of patients. As in CF males, these CBAVD patients have no urinary tract malformations or renal agenesis and this is probably explained by the fact that defects in the genital ducts, due to CFTR dysfunction, occur after the splitting of the Wolffian duct into its reproductive and ureteral parts at 7 weeks of gestation. In a minor fraction of CBAVD patients, the condition is associated with urinary tract malformations and in these patients no CFTR mutations are found. In these patients, damage to the urogenital precursor probably occurs before division of the Wolffian duct, and is unrelated to CFTR dysfunction.
In order to study the possible involvement of CFTR dysfunction in CBAVD males from Egypt, a country with presumed low frequency of CF, we have analysed the CFTR genes of 20 patients for the presence of 12 mutations and of the IVS85T variant, a variant frequently found in Caucasian CBAVD males. Sixteen of the 20 patients had no renal anomalies and one of them was a
F508 carrier. More interestingly, a very high frequency of the IVS85T variant was found in these patients: 14 of 32 alleles or 43.7% of the alleles (Table I
). In six large studies, totalling 382 CBAVD patients, the IVS85T variant was found in 155 of 764 alleles (20.3%; range 12.827.1%), which is a mean 4-fold higher than in the general Caucasian population (5.2%) (Chillon et al., 1995
; Costes et al., 1995
; Jarvi et al., 1995
; Zielenski et al., 1995
; Dumur et al., 1996
; Dörk et al., 1997
). In the Egyptian patients the frequency is 89-fold higher. Therefore, our results support the preliminary conclusion of Dörk et al. (1997), studying a few CBAVD patients of Turkish, Lebanese and Vietnamese origin, that the IVS85T variant is involved in many cases of CBAVD, including countries where CF is rare. The absence of the IVS85T variant in the spouses of the patients is probably purely coincidental since the number of individuals (20) studied is rather low. However, it supports the notion that it is not more frequently encountered in the general population in Egypt than in Caucasian populations.
In contrast, in the four CBAVD males presenting with renal anomalies the IVS85T variant was absent and all patients were found to carry 7T variants. These results are in agreement with a proposed different, but as yet unidentified, aetiology of the condition of CBAVD in these patients. However, one patient was homozygous for an L541P substitution in the CFTR gene, a change that so far has not been described either as a polymorphism or as a mutation. The L541P substitution is in the first nucleotide binding fold of the CFTR and would be localized, according to the model of Hyde et al. (1990), in the third ß-sheet of the ATP-binding cassette (ABC) of the protein. It is positioned in a stretch of three amino acids that is highly conserved among ABC proteins. Leucine and proline both have non-polar side groups but in addition proline has a rigid
-imino acid structure. Therefore, the replacement of a leucine by a proline could lead to the disturbance of the ß-sheet and impair the function of the ATP-binding cassette. The patient did not show signs of CF, but unfortunately a sweat test could not be performed. The question remains whether the observation in this patient is either a pure coincidence of renal anomalies and a rare polymorphism or mild mutation in the CFTR gene or that both contribute to the aetiology of CBAVD in this male.
In all studies performed so far, a high frequency of CFTR mutations or the IVS85T variant has been found in patients without urinary tract dysfunction. However, a substantial fraction of patients have only one mutation or one IVS85T variant or no identifiable abnormalities in the CFTR gene. Some authors suspect that the inability to detect CFTR gene abnormalities in these patients is probably not a technical problem. It is likely that renal anomalies are not easily recognized in these patients, perhaps due to only very subtle changes. Another explanation could be that a third group of patients exists in which the aetiology of CBAVD is neither related to CFTR dysfunction nor to the presence of renal abnormalities.
| Acknowledgments |
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The technical assistance of Ann Bamps, Anja Delecoeuillerie, Pascale Henderix and Mia Vercammen is gratefully acknowledged. We also thank Eric Van Emelen and Marie Christine Decreton for their help in preparing the manuscript.
| Notes |
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4 To whom correspondence should be addressed. e-mail lgenlsw{at}az.vub.ac.be
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Submitted on July 6, 1998; accepted on September 30, 1998.
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